The following snippet will iterate through the all the cells in a Mathematica notebook and close all Input cells:
Module[{nb, cell},
nb = Notebooks["mynotebook.nb"][[1]];
SelectionMove[nb, Before, Notebook];
While[SelectionMove[nb, Next, Cell]; cell=NotebookRead[nb]; {}=!=cell,
If["Input" == cell[[2]],
SetOptions[NotebookSelection[nb], "CellOpen" -> True] ]
]
]